// Copyright 2023 Jimmy Eng
//
// Licensed under the Apache License, Version 2.0 (the "License");
// you may not use this file except in compliance with the License.
// You may obtain a copy of the License at
//
//      http://www.apache.org/licenses/LICENSE-2.0
//
// Unless required by applicable law or agreed to in writing, software
// distributed under the License is distributed on an "AS IS" BASIS,
// WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
// See the License for the specific language governing permissions and
// limitations under the License.


#ifndef _COMETWRITESQT_
#define _COMETWRITESQT_


class CometWriteSqt
{
public:
   CometWriteSqt();
   ~CometWriteSqt();

   static void WriteSqt(FILE *fpout,
                        FILE *fpoutd,
                        FILE *fpdb);

   static void PrintSqtHeader(FILE *fpout,
                              CometSearchManager &searchMgr);

private:
   static void PrintResults(int iWhichQuery,
                            int iPrintTargetDecoy,
                            FILE *fpOut,
                            FILE *fpdb);
   static void PrintSqtLine(int iWhichQuery,
                            int iWhichResult,
                            Results *pOutput,
                            FILE *fpOut,
                            FILE *fpdb,
                            int iPrintTargetDecoy);
};

#endif
